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By project

Project title	Subdomain	Description
20-coral comparative	comparative	Comparative study of 20 coral transcriptomes.
4-Symbiodinium B	zoox	Gene expression variation among four species of clade B Symbiodinium.
A. equina genome	aequ	The genome of Actinia equina.
A. hyacinthus fragments	ahya	The assembled fragments of Acropora hyacinthus.
A. loripes genome	alor	The genome of Acropora loripes, a branching stony coral from the Indo-Pacific.
A. pallida genome	aiptasia	The genome of Aiptasia, a sea anemone model for coral symbiosis.
A. tenuis genome	aten	The genome of Acropora tenuis.
Actinarian transcriptomes	cnimmunity	Insights into innate immunome of actinarians via a comparative genome approach.
Aiptasia v2	aiptasiav2	Genomes of three Aiptasia strains (CC7, HAW, RED).
C. austriacus genome	caus	The genome of Chaetodon austriacus, a butterfly fish.
Corallimorpharian genomes	corallimorpharia	The genomes of two corallimorpharians, Amplexidiscus fenestrafer and Discosoma sp.
Deep sea coral transcriptomes	dsc	Transcriptomes of deep sea corals.
F. favus fragments	ffav	The assembled fragments of Favia favus.
Five anemone genomes	anemonegenomes	Genomes of five Australian anemones.
Four anthozoan transcriptomes	fouranthozoa	Transcriptomes of four anthozoans.
Fungia spp. genome	ffun	The genome of Fungia spp.
G. aspera genome	gasp	The genome of Goniastrea aspera.
G. fascicularis genome	gfas	The genome of Galaxea fascicularis.
Heat-activated S. microadriaticum transposons	smtcl	Transposons undergo increased expression in Symbiodinium microadriaticum under heat stress.
Isolates	isolates	Cultured bacterial isolates of the coral holobiont.
M. spumosa fragments	mspu	The assembled fragments of Montipora spumosa.
P. daedalea genome	pdae	The genome of Platygyra daedalea, a robust coral.
P. damicornis genome	pdam	The genome of Pocillopora damicornis, one of the most widespread corals in the world.
P. lutea genome	plut	The genome of Porites lutea.
P. speciosa genome	pspe	The genome of Pachyseris speciosa.
P. verrucosa genome	pver	The genome of Pocillopora verrucosa
R. muelleri genome	rmue	The first sea pansy genome.
ReFuGe 2020	refuge2020	ReFuGe 2020 landing page.
S. carteri genome	sc	The genome of Stylissa carteri, a low-microbial abundance sponge.
S. microadriaticum genome	smic	The genome of Symbiodinium microadriaticum, a clade A Symbiodinium.
S. pistillata genome	spis	The genome of Stylophora pistillata, a robust coral.
S. siderea transcriptome	ssid	Transcriptomes of Siderastrea siderea and its associated clade C1 Symbiodinium.
Singapore coral transcriptomes	sgcorals	Transcriptomes of corals from Singapore.
Two Symbiodinium genomes	symbs	Genomes of Symbiodinium goreaui (clade C1) and Symbiodinium kawagutii (clade F).
X. testudinaria genome	xt	The genome of Xestospongia testudinaria, a high-microbial abundance sponge.

By organism

Organism name	Subdomain	Description
Acropora digitifera	comparative	Comparative study of 20 coral transcriptomes.
Acropora hyacinthus	comparative	Comparative study of 20 coral transcriptomes.
Acropora hyacinthus	ahya	The assembled fragments of Acropora hyacinthus.
Acropora loripes	alor	The genome of Acropora loripes, a branching stony coral from the Indo-Pacific.
Acropora millepora	comparative	Comparative study of 20 coral transcriptomes.
Acropora millepora	sgcorals	Transcriptomes of corals from Singapore.
Acropora palmata	comparative	Comparative study of 20 coral transcriptomes.
Acropora tenuis	comparative	Comparative study of 20 coral transcriptomes.
Acropora tenuis	aten	The genome of Acropora tenuis.
Actinia equina	aequ	The genome of Actinia equina.
Actinia tenebrosa	cnimmunity	Insights into innate immunome of actinarians via a comparative genome approach.
Actinia tenebrosa	anemonegenomes	Genomes of five Australian anemones.
Aiptasia pallida	aiptasia	The genome of Aiptasia, a sea anemone model for coral symbiosis.
Aiptasia pallida	aiptasiav2	Genomes of three Aiptasia strains (CC7, HAW, RED).
Amphimedon queenslandica	comparative	Comparative study of 20 coral transcriptomes.
Amplexidiscus fenestrafer	corallimorpharia	The genomes of two corallimorpharians, Amplexidiscus fenestrafer and Discosoma sp.
Anemonia viridis	comparative	Comparative study of 20 coral transcriptomes.
Anthopleura buddemeieri	cnimmunity	Insights into innate immunome of actinarians via a comparative genome approach.
Anthopleura elegantissima	comparative	Comparative study of 20 coral transcriptomes.
Anthopleura elegantissima	fouranthozoa	Transcriptomes of four anthozoans.
Astreopora expansa	sgcorals	Transcriptomes of corals from Singapore.
Astreopora sp.	comparative	Comparative study of 20 coral transcriptomes.
Aulactinia veratra	cnimmunity	Insights into innate immunome of actinarians via a comparative genome approach.
Aulactinia veratra	anemonegenomes	Genomes of five Australian anemones.
Bacterial isolates	isolates	Cultured bacterial isolates of the coral holobiont.
Calliactis polypus	cnimmunity	Insights into innate immunome of actinarians via a comparative genome approach.
Calliactis polypus	anemonegenomes	Genomes of five Australian anemones.
Chaetodon austriacus	caus	The genome of Chaetodon austriacus, a butterfly fish.
Cladocopium C15	plut	The genome of Porites lutea.
Cyphastrea serailia	sgcorals	Transcriptomes of corals from Singapore.
Dendrophylia sp.	dsc	Transcriptomes of deep sea corals.
Diploastrea heliopora	sgcorals	Transcriptomes of corals from Singapore.
Discosoma sp.	corallimorpharia	The genomes of two corallimorpharians, Amplexidiscus fenestrafer and Discosoma sp.
Eguchipsammia fistula	dsc	Transcriptomes of deep sea corals.
Ephydatia muelleri	comparative	Comparative study of 20 coral transcriptomes.
Favia favus	ffav	The assembled fragments of Favia favus.
Favia sp.	comparative	Comparative study of 20 coral transcriptomes.
Fimbriaphyllia ancora	sgcorals	Transcriptomes of corals from Singapore.
Fungia scutaria	comparative	Comparative study of 20 coral transcriptomes.
Fungia scutaria	fouranthozoa	Transcriptomes of four anthozoans.
Fungia spp.	ffun	The genome of Fungia spp.
Galaxea astreata	sgcorals	Transcriptomes of corals from Singapore.
Galaxea fascicularis	gfas	The genome of Galaxea fascicularis.
Goniastrea aspera	gasp	The genome of Goniastrea aspera.
Goniastrea retiformis	sgcorals	Transcriptomes of corals from Singapore.
Goniopora columna	sgcorals	Transcriptomes of corals from Singapore.
Gorgonia ventalina	comparative	Comparative study of 20 coral transcriptomes.
Herpolitha limax	sgcorals	Transcriptomes of corals from Singapore.
Heterodactyla hemprichii	anemonegenomes	Genomes of five Australian anemones.
Hydra magnipapillata	comparative	Comparative study of 20 coral transcriptomes.
Lobophyllia radians	sgcorals	Transcriptomes of corals from Singapore.
Madracis auretenra	comparative	Comparative study of 20 coral transcriptomes.
Mnemiopsis leidyi	comparative	Comparative study of 20 coral transcriptomes.
Monosiga brevicollis	comparative	Comparative study of 20 coral transcriptomes.
Montastraea cavernosa	comparative	Comparative study of 20 coral transcriptomes.
Montastraea faveolata	comparative	Comparative study of 20 coral transcriptomes.
Montastrea cavernosa	fouranthozoa	Transcriptomes of four anthozoans.
Montipora spumosa	mspu	The assembled fragments of Montipora spumosa.
Nemanthus annamensis	cnimmunity	Insights into innate immunome of actinarians via a comparative genome approach.
Nematostella vectensis	comparative	Comparative study of 20 coral transcriptomes.
Oscarella carmela	comparative	Comparative study of 20 coral transcriptomes.
Oulastrea crispata	sgcorals	Transcriptomes of corals from Singapore.
Pachyseris speciosa	pspe	The genome of Pachyseris speciosa.
Pachyseris speciosa	sgcorals	Transcriptomes of corals from Singapore.
Platygyra carnosus	comparative	Comparative study of 20 coral transcriptomes.
Platygyra daedalea	pdae	The genome of Platygyra daedalea, a robust coral.
Platygyra sinensis	sgcorals	Transcriptomes of corals from Singapore.
Plesiastrea versipora	sgcorals	Transcriptomes of corals from Singapore.
Pleurobrachia pileus	comparative	Comparative study of 20 coral transcriptomes.
Pocillopora damicornis	comparative	Comparative study of 20 coral transcriptomes.
Pocillopora damicornis	pdam	The genome of Pocillopora damicornis, one of the most widespread corals in the world.
Pocillopora verrucosa	pver	The genome of Pocillopora verrucosa
Porites astreoides	comparative	Comparative study of 20 coral transcriptomes.
Porites australiensis	comparative	Comparative study of 20 coral transcriptomes.
Porites lobata	comparative	Comparative study of 20 coral transcriptomes.
Porites lobata	sgcorals	Transcriptomes of corals from Singapore.
Porites lutea	plut	The genome of Porites lutea.
Pseudodiploria strigosa	comparative	Comparative study of 20 coral transcriptomes.
ReFuGe 2020	refuge2020	ReFuGe 2020 landing page.
Renilla muelleri	rmue	The first sea pansy genome.
Rhizotrochus typus	dsc	Transcriptomes of deep sea corals.
Seriatopora hystrix	comparative	Comparative study of 20 coral transcriptomes.
Seriatopora hystrix	fouranthozoa	Transcriptomes of four anthozoans.
Seriatopora sp.	comparative	Comparative study of 20 coral transcriptomes.
Siderastrea siderea	ssid	Transcriptomes of Siderastrea siderea and its associated clade C1 Symbiodinium.
Stylissa carteri	sc	The genome of Stylissa carteri, a low-microbial abundance sponge.
Stylophora pistillata	comparative	Comparative study of 20 coral transcriptomes.
Stylophora pistillata	spis	The genome of Stylophora pistillata, a robust coral.
Symbiodinium (clade C)	ssid	Transcriptomes of Siderastrea siderea and its associated clade C1 Symbiodinium.
Symbiodinium aenigmaticum	zoox	Gene expression variation among four species of clade B Symbiodinium.
Symbiodinium goreaui	symbs	Genomes of Symbiodinium goreaui (clade C1) and Symbiodinium kawagutii (clade F).
Symbiodinium kawagutii	symbs	Genomes of Symbiodinium goreaui (clade C1) and Symbiodinium kawagutii (clade F).
Symbiodinium microadriaticum	smtcl	Transposons undergo increased expression in Symbiodinium microadriaticum under heat stress.
Symbiodinium microadriaticum	smic	The genome of Symbiodinium microadriaticum, a clade A Symbiodinium.
Symbiodinium minutum	zoox	Gene expression variation among four species of clade B Symbiodinium.
Symbiodinium pseudominutum	zoox	Gene expression variation among four species of clade B Symbiodinium.
Symbiodinium psygmophilum	zoox	Gene expression variation among four species of clade B Symbiodinium.
Telmatactis australiensis	anemonegenomes	Genomes of five Australian anemones.
Telmatactis sp.	cnimmunity	Insights into innate immunome of actinarians via a comparative genome approach.
Trichoplax adherens	comparative	Comparative study of 20 coral transcriptomes.
Turbinaria mesenterina	sgcorals	Transcriptomes of corals from Singapore.
Xestospongia testudinaria	xt	The genome of Xestospongia testudinaria, a high-microbial abundance sponge.